Ratland:Projects
From wiki
How to run a study
Ongoing studies
Project Name People Folder Status DTI08 - Challenge Grant PN45 Francois /biomed-resimg/rodent/FAS_sulik/DTI08/PN45ChallengeGrant archived RPV0001 Francois, Rich /rodent/Crews/NADIA/RPV0001/ open Rob Francois /rodent/FAS_sulik/gipl\ files archived MakeAtlas batchmake scripts Francois /rodent/bin_linux64/MakeAtlasScripts3 closed Scan-Rescan Francois, Ipek /rodent/FAS_sulik/DTI08/ScanRescan archived Rob GD19 processing Francois, Ipek /rodent/FAS_sulik/GD19DTI unknown Visual Field Francois, Beatriz /Human/NDRC/SmithVisualFields/Spencer-CoregEyeFields/ROI_training_set unknown/waiting MEMRI Sulik Francois, Beatriz /Animal/rodent/FAS_sulik/MEMRI-Manganese open P14 - AtlasValidation Francois, Beatriz /Animal/rodent/AtlasValidationJohnsonData/TBM/normal archived
Documentation
BeaProjectPages2016
MakeAtlasScript processing information
- Data Transfer and Conversion
- Spreadsheet to fill in when processing a project. If unable to access, ask Ashley, Francois, Bea or Rich to get access to the document.
- User manual for batchmake scripts (version 3) (version 2)
- Filename Conventions (google document)
- Bugs/feature requests for the pipeline
Additional processing
- Find correct measurement frame for the DWI
- Signal to Noise Ratio (SNR) and Contrast to Noise Ratio (CNR)
- Cortical Thickness Tutorial
- Running Pipeline Killdevil
- Processing DT Images with FSL
