HDNI:General
From wiki
HDNI/CHDI DTI QC project
General Docs
- Hans Johnson's report on the data 2008/2009
- grant proposal
- Login to Track-HD tracking site
- Login to LONI IDA
Important dates
- 08/01/2010: 1st Quarterly QC report sent to TRACK-HD Central Coordination.
- 10/01/2010: 2nd Quarterly QC report sent to TRACK-HD Central Coordination. 6-month Progress report prepared for Foundation
- 01/01/2011: 3rd Quarterly QC report sent to TRACK-HD Central Coordination. DTIprep tool dissemination finalized with appropriate documentation and test data
- 03/07/2011: DTI analysis framework dissemination finalized with documentation and test data
- 03/31/2011: Final QC report sent to TRACK-HD Central Coordination. 10-month Progress report prepared for Foundation
Tracking of HDNI QC data
Dates associated with finishing each processing step are saved in this table, as well as comments associated with the processing
Data acquired after 06/01/2010
Data has to be processed and QC'ed within 5 working days of availability at LONI/download to UNC
| SubjectID | Status | Downloaded | Conversion to NHDR | DTIPrep pass | Visual QC pass | Upload of dataset |
| After 06/01 | =========== | =========== | =========== | =========== | =========== | =========== |
| 38709983X | Borderline, coverage (intermediate) | 12/24/2010 | 02/03/2011 | 02/03/2011, Bad coverage, cerebellum major cut; 6 (18%) directions excluded, 1 direction (# 4) manually extracted | 02/03/2011, pre-frontal artifact in NRRD files | 02/03/2011, report uploaded, LONI upload not yet |
| 122786400 | Borderline, coverage (minor) | 12/18/2010 | 02/03/2011 | 02/04/2011, Bad coverage, minor cerebellum cut; 3 manual extractions (#s 1,32,58); "bar" artifacts @ axs 18,21,24,26-32, 40; lateral distortion @ ax 13, distortion art. (shift) @ ax 12 | 02/04/2011, NRRD files, "Z stripe" artifact @ ax 17, slight pre-front sig loss/ slight post. occipital sig loss, wrapping artifacts | 02/04/2011, report uploaded on track-hd though may have been closed, LONI upload not yet |
| 938499648 | Borderline, coverage (minor) | 12/18/2010 | 02/03/2011 | 02/03/2011, Bad coverage (minor), 5 (7%) of directions excluded, 1 manually extracted (#29); lateral distortions @ axs 11-16, "bar" artifacts - axs 21, 28-36, geometrict art. @ ax 29, distortion art. (shifting) ax 18,23 | 02/04/2011, NRRD files - wrapping artifacts, slight pre-frontal sig loss/ slight post. occipital sig loss | 02/04/2011, report uploaded on track-hd though may have been closed, LONI upload not yet |
| 839741886 | Borderline, coverage (minor) | 12/18/2010 | 02/09/2011 | 02/09/2011, Bad coverage, superior minor cut; 2 (3%) directions excluded, 2 directions manually extracted (#s 1,59); lateral distortions @ axs 11-19, "bar" artifacts @ axs 7, 24-28, 33, "Z stripe" @ 22,23 | 02/09/2011, NRRD files - anterior pre-frontal sig loss/posterior occipital sig loss, wrapping artifacts | 02/09/2011, report uploaded,LONI upload not yet |
| 782783998 | Pass | 12/18/2010 | 02/07/2011 | 02/08/2011, 6 (8%) directions excluded, 2 directions (#s 1,30) manually extracted; lateral distortions @ axs 12-14, "bar" artifacts 18-26, 30,33; "Z-stripe" @ ax 22, distortion (shifting) artifact @ ax 16,17; visible anomaly in axial 28 L side associated with lateral sulcus sig loss/artifact | 02/08/2011, NRRD files - wrapping artifacts, some anterior pre-frontal sig loss/post. occipital sig loss | 02/08/2011, report uploaded, LONI upload not yet |
| 781352297 | Borderline, coverage (minor) | 12/18/2010 | 02/09/2011 | 02/09/2011, Bad coverage minor cuperior and cerebellum cut; 1 (1%) direction excluded, 3 directions (#s 1,33,42) extracted; lateral distortions @ axs 10-16, "bar" artifacts @ axs 19, 21-28, 34-37; distortions @ ax 28,29 | 02/10/2011, NRRD files - wrapping artifacts, slight anterior pre-frontal sig loss/slight post. occipital sig loss | 02/10/2011, report uploaded, LONI upload not yet |
| 815141274 | Borderline, coverage (minor) | 12/18/2010 | 02/08/2011 | 02/08/2011, Bad coverage, minor superior and inferior cuts, 2 (3%) directions excluded, 1 (#31) manually extracted; lateral distortions @ 10-16, "bar" artifacts @ 21, 25-30, 33, 34; "Z-stripe" @ axs 14, 18; distortion artifacts (shifting) @ ax 26 | 02/08/2011, NRRD files - pre-frontal sig loss/post. occipital sig loss artifact, wrapping artifact | 02/09/2011, report uploaded, LONI upload not yet |
| 693384711 | FAIL | 12/17/2010 | 12/17/2010 | 12/20/2010, At least 18 directions excluded; 17 manually (#s 1,2,3,9,13,14,15,17,18,20,21,29,30,36,37,39,44) | 12/20/2010, report uploaded, LONI upload not yet | |
| 083006668 | Borderline, coverage (minor) | 12/17/2010 | 02/09/2011 | 02/09/2011, Bad coverage, minor inferior and superior cuts; 2 (3%) directions excluded, 1 direction (#31) manually extracted; lateral distortions @ axs 10-15, "bar" artifacts @ axs 18-24, 30-33; "Z-stripe" @ ax 22, @ ax 27 frontal distort/blur | 02/09/2011, NRRD files - wrapping artifacts, slight sig loss in pre-frontal lobe, and very slight sig loss in posterior occipital lobe | 02/09/2011, report uploaded, LONI upload not yet |
| 668718721 | Borderline, coverage (minor) | 12/17/2010 | 02/18/2011 | 02/18/2011, Bad coverage, minor cerebellum cut; 6 (8%) directions excluded, 2 directions (#s 31, 54) manually extracted; lateral distortions @ axs 9-12, bar artifacts @ axs 13-26, 28,36; frontal dist. @ axs 29,30, 32; geometric artifact @ ax 22 | 02/18/2011, NRRD files - wrapping artifacts, some anterior pre-frontal sig loss/posterior occipital sig loss, "Z-stripe" type artifact @ axs 23,24 | 02/21/2011, report uploaded, LONI upload not yet |
| 085951323 | Borderline, coverage (minor) | 12/17/2010 | 02/03/2011 | 02/03/2011, Bad coverage (minor); 3 (4%) directions excluded, 2 manually extracted (#s 1, 32); lateral artifacts @ axs 14-18, "bar" artifacts @ axs 21-27, 29, 31, 34, 38; distortion artifact (shift) @ ax 20, "Z-stripe" @ axs 19 & 23 | 02/04/2011, NRRD files - Wrapping art, anterior pre-frontal sig loss/ post. occipital sig loss, Z stripe artifact vis in ax 24 | 02/04/2011, not available on Track-HD website |
| 993739866 | Borderline, coverage (minor) | 12/17/2010 | 02/01/2011 | 02/14/2011, Bad coverage, minor cerebellum cut; 5 (7%) directions excluded; 1 direction (# 30) manually extracted; lateral distortions @ axs 7-12, bar artifacts @ axs 14-21, 23; geometric art @ ax 27 | 02/14/2011, slightly weak arcuate (possibly due to anatomy), NRRD files - signal loss in left pre-frontal lobe in addition to zoltan-typical anterior pre-frontal sig loss/posterior occipital sig loss artifact | 02/14/2011, report uploaded, LONI upload not yet |
| 076516247 | Pass | 12/17/2010 | 02/01/2011 | 02/17/2011, 2 (3%) directions excluded, 2 directions (#s 31,41) manually extracted; frontal distortions,lateral distortions @ axs 13-15, bar artifacts @ axs 21,23-25, 28-32, 39-40; shifting artifacts @ axs 27,28 | 02/17/2011, NRRD files - some anterior pre-frontal sig loss/posterior occipital sig loss, wrapping artifacts | 02/17/2011, report uploaded, LONI upload not yet |
| 945595159 | Pass | 12/17/2010 | 02/02/2011 | 02/04/2011, 1 manual extraction (# 33), lateral artifacts @ axs 13-15 (w/"Z stripe @ 15), "bar" artifacts 21-27, geometric (rect.) artifact @ ax 45 | 02/04/2011, NRRD files - wrapping arts., posterior occipital sig loss/ slight pre-frontal artifact, distortion in axials 15/16 in posterior section of L side | 02/07/2011, report uploaded, LONI upload not yet |
| 508171175 | Borderline, coverage (minor) | 12/17/2010 | 01/31/2011 | 02/07/2011, Bad coverage, 1 superior cut/1 inferior cut; 1 (1%) direction excluded, 7 directions manually extracted; "bar" artifacts @ axs 19-27, 32, 34, 35; lateral distortions @ axs 13-17, geometric artifact @ ax 46 | 02/07/2011, NRRD files - anterior pre-frontal sig loss/artifact; occipital sig loss; wrapping artifacts | 02/08/2011, report uploaded, LONI upload not yet |
| 790072700 | Borderline, coverage (minor) | 12/17/2010 | 01/27/2011 | 01/28/2011, Bad coverage minor - 1 slice cut sup; 5 (7%) directions excluded, 4 directions manually excluded (#s 1,31,45,59); "bar" artifacts @ axs 3, 22-24, 29-30, 33-35; lateral artifacts @ axs 12-17 | 01/28/2011, NRRD files - pre-frontal sig loss/post. occ. sig loss; wrapping artifacts, distortions | 02/03/2011, report uploaded, LONI upload not yet |
| 409361689 | Pass | 12/17/2010 | 01/28/2011 | 01/31/2011, 1 (1%) direction excluded, 1 direction (# 1) manually extracted; frontal distortions, "bar" artifacts - axs 9, 21-23, 26, 28,30-31, 33; lateral artifacts @ axs 13-17 | 01/31/2011, NRRD files- wrapping artifacts, pre-frontal sig loss/posterior occipital sig loss | 02/08/2011, report uploaded, LONI upload not yet |
| 897826627 | Pass | 12/17/2010 | 01/28/2011 | 01/31/2011, 3 (4%) directions excluded, 2 directions (#s 32,35) manually extracted; "bar" artifacts @ axs 22-26, 29-30; "lateral" artifacts @ axs 13-15, 18; "Z-stripe" @ axs 16,17; distortion (shifting) @ ax 20,33 | 01/31/2011, NRRD files - wrapping artifacts, ant pre-frontal sig loss/ occipital sig loss | 02/10/2011, report uploaded, LONI upload not yet |
| 552870477 | Borderline, coverage (minor) | 12/17/2010 | 01/27/2011 | 01/28/2011, Bad coverage, very minor cerebelllum cut; 1 (1%) direction extracted, 2 directions (#s 1,33) manually extracted; lateral distortions in axs 13-16; "bar" arts. axs 22-26, 29-30, 32; "geometric" art. @ ax 25 | 01/28/2011, NRRD files - wrapping artifacts, anterior pre-frontal sig loss/ post. occipital sig loss | 02/04/2011, report uploaded, LONI upload not yet |
| 578546781 | Borderline, coverage (minor) | 12/17/2010 | 01/27/2011 | 01/28/2011, Bad coverage, very minor superior cut; 1 (1%) direction excluded, 3 directions (#s 1,32,38) manually extracted; lateral distortions @ axs 15-16, 18-21, "bar" artifacts @ axs 17, 24-28; "Z stripe" @ axs 16,17,18 | 01/28/2011, NRRD files - slight sig loss in anterior pre-frontal/ posterior occipital sig loss, wrapping artifacts | 02/07/2011, report uploaded, LONI upload not yet |
| 719200210 | Borderline, coverage (minor) | 12/17/2010 | 01/27/2011 | 01/28/2011, Bad coverage, minor cerebellum cut; 1 (1%) direction excluded, 2 directions (#s 1, 33) manually extracted; lateral distortions @ axs 11-15, "bar" artifacts @ axs 17, 22, 25-27, 30-31, geometric artifact @ ax 24, "Z-stripe" @ ax 19 | 01/28/2011, NRRD files - wrapping artifacts, slight anterior pre-frontal sig loss/posterior occipital sig loss, distortions | 02/28/2011, report uploaded on track-hd though may have been closed, LONI upload not yet |
| 499131314 | Pass | 12/17/2010 | 01/18/2011 | 01/28/2011, 1 (1%) direction excluded, 1 direction (#32) manually extracted; laterally distortions @ axs 14-17, "bar" artifacts @ axs 24-28, 30, 40, 41; frontal distort. @ axs 34, 35 (shift/blur), geo artifact @ ax 32 | 01/28/2011, wrapping artifacts, slight anterior pre-frontal sig loss/posterior occipital sig loss | 02/09/2011, report uploaded, LONI upload not yet |
| 200163049 | FAIL | 12/17/2010 | 01/14/2011 | 02/09/2011, visible unusual dark artifact posterior/superior section of parietal lobe (particularly on one side); appropriate DWIs extracted for 27% exclusions. However, these exclusions made direction distribution extremely non-uniform | 02/10/2011, examined pre-manual QC file in Slicer, artifact corresponded with red artifact in color FA, yet signal was not above 1 in the FA -- case failed but cannot rule out the small possibility of abnormal pathology/anatomy | 02/10/2011, report uploaded, LONI upload not yet |
| 917669620 | Borderline, coverage (minor) | 12/17/2010 | 01/14/2011 | 01/27/2011, Bad coverage, minor cerebellum cut; 7 (10%) directions extracted, 5 directions (#s 1,2,6,30,26) manually extracted; "lateral" distortions @ axs 10-14, "bar" artifacts @ axs 17,19, 23-25, 28-29, 34 | 01/27/2011, NRRD files - wrapping artifacts, slight pre-frontal sig loss/post. occipital sig loss, "Z-stripe" @ ax 17 | 02/10/2011, report uploaded, LONI upload not yet |
| 901508754 | FAIL | 12/17/2010 | 01/14/2011 | 01/25/2011, 2 directions excluded by DTIPrep, 11 (15%) directions manually extracted due to posterior artifact visible in sagittal 57 @ approx coronal 69. Resulting distribution of remaining directions did not maintain high enough coverage of the sphere | 02/24/2011, report uploaded, LONI upload not yet | |
| 503434462 | Borderline, coverage (minor) | 12/14/2010 | 01/19/2011 | 01/19/2011, bad coverage, sup. minor cut; 9 manual extractions (#s 1,8,14,29,33,37,39,45,57) due to posterior parietal artifact; frontal distortions, lateral distortions @ axs 12-15, shifting distortions @ axs 27, 31, "bar" artifacts @ axs 18, 22-30, 35-41, "Z-stripe" @ ax 5, geometric artifacts @ ax 27,41; pos | 01/19/2011, NRRD files - distortions, wrapping artifacts, pre-frontal sig loss/ posterior occipital sig loss | 02/14/2011, report uploaded, LONI upload not yet |
| 510498223 | Borderline, coverage (intermediate) | 12/02/2010 | 01/13/2011 | 01/19/2011, Bad coverage, major cerebellum cut; 1 (1%) exclusion, manual extractions (#s 1, 32); lateral distortions @ axs 6-11, 26, shift distort. @ ax 12, "bar" artifacts @ axs 13-25, 33-36; geometric artifacts @ axs 25, 47 | 01/19/2011, NRRD files - wrapping artifacts, slight PF (pre-frontal ) sig loss, posterior occipital sig loss, visible distortion, some slight "ladder" artifact in ax 29 | 02/03/2011, report uploaded, LONI upload not yet |
| 84736827X | Borderline, coverage (minor) | 12/02/2010 | 01/13/2011 | 01/18/2011, bad coverage - very minor sup. cut, 3 (4%) exclusions, 1 (#30) manual extraction; distortion-related artifacts @ axs 7, 9-11, 18,24, 28; lateral distort. artifacts @ axs 12-13, 15; "bar" artifacts @ axs 21-28, 32-34, "geometric artifact @ ax 40, "Z-stripe" @ axs 2-4 | 01/18/2011, NRRD files- frontal distortion, wrapping artifacts, pre-frontal sig loss/post. occipital sig loss | 02/03/2011, report uploaded, LONI upload not yet |
| 640127584 | Borderline, coverage (minor) | 12/02/2010 | 01/13/2011 | 01/14/2011, Bad coverage (minor) minor cerebellum and superior cut; 3 (4%) directions excluded, 1 direction manually extracted (#32); distortion (shift) @ ax 7, lateral artifact @ axs 10-12, 14-15; "bar" artifacts @ axs 20-23, 27-29, "Z-stripe" artifact @ axs 14, 22, 25 | 01/14/2011, NRRD file - distortion, minor wrapping artifacts, anterior pre-frontal sig loss/post. occipital sig loss, artifact/anomaly in left cerebellum | 02/03/2011, report uploaded, LONI upload not yet |
| 766360511 | Pass | 12/02/2010 | 01/13/2011 | 01/14/2011, 1 (1%) direction excluded, 1 direction extracted (# 32), lateral artifact @ axs 11-13, "bar" artifacts @ ax 14, 18, 20-30, distortion artifacts @ axs 3, 32 | 01/14/2011, NRRD files - distortions, wrapping artifacts, anterior pre-frontal sig loss/post. occipital sig loss | 02/10/2011, report uploaded, LONI upload not yet |
| 118834031 | Borderline, coverage (minor) | 12/02/2010 | 01/13/2011 | 01/14/2011, Bad coverage (minor) 1 slice superior cut, minor cerebellum cut; 6 (8%) directions excluded; lateral distortions @ axs 10-15, 18; "Z-stripe" ax 20, "bar" artifacts ax 24-29, 32, 46; distortion (shifting) @ ax 0, geometric artifact @ ax 19 | 01/14/2011, NRRD files - wrapping artifacts, visible distortions, "Z-stripe" @ ax 21, pre-frontal sig loss/post. occipital sig loss | 02/03/2011, report uploaded, LONI upload not yet |
| 925554571 | Pass | 12/02/2010 | 01/12/2011 | 01/14/2011, 3 (4%) directions excluded, 1 (#31) manual extraction, frontal distortions, lateral distortions @ axs 13-16, "bar" artifacts @ axs 19-20, 22-28, 31, 33-39, distortion (shifting) @ ax 19, geometric artifact @ ax 6 | 01/14/2011, NRRD files - wrapping artifact, some pre-frontal sig loss/posterior occipital sig loss | 02/17/2011, report uploaded, LONI upload not yet |
| 068044003 | Borderline, coverage (intermediate) | 12/02/2010 | 01/11/2011 | 01/12/2011, Bad coverage (intermediate) major cerebellum cut, minor occipital cut; 6 (8%) exclusions, 6 manual extractions; frontal distortion, lateral artifacts 7-9, "bar" artifacts axs 6, 11-13, 15-20, 22-28, 33,35-37, "Z-stripe" ax 42 | 01/13/2011, NRRD files - "ladder" artifact axs 38-39, distortion, wrapping artifacts, pre-frontal sig loss/post. occiptal sig loss | 02/03/2011, report uploaded, LONI upload not yet |
| 045416487 | Pass | 12/02/2010 | 01/11/2011 | 01/12/2011, very very minor cerebellum cut, 1 (1%) exclusion, 1 manual extraction (#32); distortion (shifting) axs 9, 12; lateral distortions 10-11, "bar" artifacts @ axs 13-22, 26-28, 31-32, 43, "grainy" stripe @ ax 26; geometric artifact @ ax 20 | 01/12/2011, distortions, pre-frontal signal loss/posterior occipital signal loss, "Z-stripe" visible @ axs 24-26, wrapping artifacts | 02/18/2011, report uploaded, LONI upload not yet |
| 468379094 | Borderline, coverage (minor) | 12/02/2010 | 01/11/2011 | 01/12/2011, Bad coverage (minor) very minor sup. slice cut, very minor cerebellum cut; 6 exclusions (8%), 3 manual extractions (#s 1,31,55); clear frontal distortions, distortion (shifting) axs 6-11, 24, 30-31, lateral artifacts @ axs 12, 18, 19, "bar" artifacts @ axs 20-29, 34-37, 42-44, | 01/12/2011, NRRD files - distortions, some signal loss both sides superior frontal lobe, anterior pre-frontal sig loss/posterior occipital sig loss, wrapping artifacts | 02/03/2011, report uploaded, LONI upload not yet |
| 094406044 | Borderline, coverage (minor) | 12/02/2010 | 01/11/2011 | 01/11/2011, Bad coverage minor cut cerebellum & minor sup. cut; DTIPrep 1 (1%) exclusion, 2 manual extractions (#s 1, 32); lateral distortions axs 16-18, distortion (shifting) axs 10-13, "bar" artifacts axs 20-30/35-36, geometric artifacts ax 20 | 01/12/2011, NRRD files - wrapping artifacts, distortion, some pre-frontal sig loss/posterior occipital sig loss | 02/03/2011, report uploaded, LONI upload not yet |
| 568115448 | Borderline, coverage (minor) | 12/02/2010 | 01/10/2011 | 01/11/2011, Bad coverage (minor) cerebellum minor cut; 3 (4%) directions excluded, 4 directions (#s 1, 6, 30, 33) manually extracted; clear frontal distortions, distortion axs 5-6 - shifting @ axs 28-33, lateral distortions @ axs 7-12, "bar" artifacts @ axs 13-26 [vertical at axial 22 and sagittal 37], "Z-stripe" @ ax 1 | 01/11/2011, NRRD files - distortion, wrapping artifacts, anterior pre-frontal sig loss/ posterior occipital loss, axs 37-40 "ladder" artifact (corresponds with small spots of sig loss in the FA frontal lobe), | 02/03/2011, report uploaded, LONI upload not yet |
| 505250482 | Pass | 12/02/2010 | 01/10/2011 | 01/11/2011, 3 (4%) directions excluded, 3 manual extractions (#s 1,33,39); frontal distortions, lateral distortions @ axs 12-17, "bar" artifacts @ axs 18-31, distortions @ ax 8-10 | 01/11/2011, NRRD files - wrapping artifacts, frontal distortions, anterior pre-frontal sig loss/posterior occipital sig loss, "Z-stripe" artifact @ ax 15 | 02/23/2011, report uploaded, LONI upload not yet |
| 829403224 | Borderline, coverage (minor) | 12/02/2010 | 01/11/2011 | 01/13/2011, Bad coverage, minor cerebellum cut; 6 (8%) exclusions, 6 manual extractions (#s 1,19,20,21,30,52); PF distortions, "bar" artifacts -axs 7,14,17-22, 28-29, 32, lateral artifacts @ axs 4, 8-13, distortion (shifting) @ axs 33-35 | 01/13/2011, NRRD files - frontal distortion, wrapping artifacts, pre-frontal sig loss/post. occipital sig loss | 02/03/2011, report uploaded, LONI upload not yet |
| 198645975 | Borderline, coverage (minor) | 12/02/2010 | 01/11/2011 | 01/14/2011, very minor sup./inf. cuts (~1 slice); 2 (3%) exclusions; clear frontal distortions, lateral distortions @ axs 12-19, "bar" artifacts @ axs 21-25, 29-31, 36; "Z-stripe" 23, 24, distortion @ ax 8 | 01/14/2011, NRRD files - wrapping artifacts, pre-frontal sig loss/posterior occipital sig loss, distortion | 02/11/2011, report uploaded LONI upload not yet |
| 626471168 | Pass | 12/02/2010 | 01/11/2011 | 01/12/2011, 1 (1%) exclusion, 1 manual extraction (#1); frontal distortion visible, lateral distortion in axs 10-14, "bar" artifacts axs 16-17, 19-31 (28 "grainy" bar), "Z-stripe" art. ax 22, distortion (shift artifact) ax 32, geometric artifact ax 34 | 01/12/2011, NRRD files - wrapping artifacts, pre-frontal sig loss/posterior occipital sig loss | 02/18/2011, report uploaded LONI upload not yet |
| 885020546 | Borderline, coverage (minor) | 12/02/2010 | 01/06/2011 | 01/10/2011, Bad coverage, minor cerebellum and superior cuts; 1 (1%) direction excluded, 1 direction (# 32) manually extracted; frontal distortions, lateral distortions - axs 11-14, "bar" artifacts - axs 15, 17-26 | 01/11/2011, NRRD files - wrapping arts., ant. pre-frontal sig loss/post. occ. sig loss, "Z-stripe" artifact visible in axs 12, 13; distortions | 02/14/2011, report uploaded, LONI upload not yet |
| 73778588X | Borderline, coverage (minor) | 12/01/2010 | 01/05/2011 | 01/10/2011, Bad coverage, minor superior cut; 17 (24%) directions excluded, 2 directions (#s 23, 24) manually extracted; lateral distortion visible axs 12-15, "bar" artifacts in axs 19-23, 28-32, "Z-stripe" artifact axs 17-19, distortion artifact axial 16 | 01/10/2011, NRRD files - wrapping arts, ant. pre-frontal sig loss/ post. occ. sig loss, frontal distortion; MD - axial 20 "ladder" artifact is visible | 02/03/2011, report uploaded, LONI upload not yet |
| 295550124 | Borderline, coverage (minor) | 12/01/2010 | 01/05/2011 | 01/10/2011, Bad coverage- 1 sup. slice cut; 2 (3%) directions excluded, 1 direction (# 31) manually extracted; frontal distortions, lateral distortions axs 12-17; "bar" artifacts axs 20-25, 27, 30, 36-38; "geometric" artifacts axial 26, "Z-stripe" at ax 15 | 01/10/2011, NRRD files- wrapping, pre-frontal sig loss/post occipital sig loss; MD - vertical pixelation visible coronal 49 | 02/03/2011, report uploaded, LONI upload not yet |
| 135074011 | Pass | 12/01/2010 | 01/05/2011 | 01/10/2011, 2 (3%) directions excluded, 2 (#s 18, 41) manually extracted; 1 slice cerebellum cut one side, "bar" artifacts - axs 15, 18-20, 22-27, geometric artifact - axs 47-49, lateral distortion arts - axs 8-10, 13 & 14, "Z-stripe" artifact in ax 15, distortion anomaly sag 50 @ coronal #75 - most visible in axial # 17 believed to be caused by perspective and anatomy | 01/10/2011, NRRD file - wrapping art., ant. pre-frontal sig loss/post. occipital sig loss, ~ ax 16 intense stripe | 02/23/2011, report uploaded, LONI upload not yet |
| 560216908 | Pass | 12/01/2010 | 12/23/2010 | 01/06/2011, 2 (3%) directions extracted, 1 (# 31) direction manually extracted; frontal distortion visible, lateral dist. axs 12-16, "bar" artifacts in axs 17-24, 28-36, "Z-stripe" artifacts in axs 15 & 27, geometric artifacts in axials 10 & 35 | 01/06/2011, NRRD files - wrapping artifacts, ant. pre-frontal sig loss/post. occipital sig loss; unusually enlarged intercranial space | 02/11/2011, report uploaded, LONI upload not yet |
| 423187239 | Borderline, coverage (minor) | 12/01/2010 | 12/23/2010 | 01/06/2011, Bad coverage, 1 slice sup. cut; 3 manual extractions (#s 1, 6, 33); frontal distortions visible, lateral distortions in axial 14, distortion (shifting) artifacts in axs 11-13, 15, 16, "Z-stripe" artifact in ax 23, "bar" artifacts in axs 23-29,33-36; geometric artifact in axial 49; @ R side pre-frontal blur from distortion | 01/06/2011, NRRD files - wrapping artifactions, ant. pre-frontal sig loss/posterior occipital sig loss; frontal dist. also visible | 02/03/2011, report uploaded, LONI upload not yet |
| 441374525 | Borderline, coverage (minor) | 12/01/2010 | 12/22/2010 | 01/05/2011, Bad coverage, minor cerebellum cut, 1 slice superior cut, 2 (3%) auto exclusions, 1 (# 32) manual exclusion; frontal distortions; "bar" artifacts axs 3, 15, 17-20, 23-28, 35; "distortion-related" artifacts axs 7, 9-11, 32, 37; "geometric" artifacts ax 23 | 01/06/2010, NRRD files - wrapping artifacts, pre-frontal sig loss/posterior occipital sig loss | 02/03/2011, report uploaded, LONI upload not yet |
| 633319246 | Borderline, bad coverage (minor) | 12/01/2010 | 12/22/2010 | 12/28/2010, Bad coverage 3 slices superior cut, minor cerebellum cut;2 (3%) directions excluded, 2 (#s 1, 31) manually extracted; posteriorly located geometric artifact at axial 49, anamoly at axial 29, distortion artifacts at axs 12,16, "bar" artifacts in axs # 19-38 | 12/28/2010, NRRD files - visible distortion, wrapping artifacts, ant. pre-frontal sig loss/posterior occipital sig loss, in axial # 17 L side - "Z-stripe" artifact visible in lateral portion | 02/03/2011, report uploaded, LONI upload not yet |
| 404560160 | Borderline, coverage (very minor) | 12/01/2010 | 12/22/2010 | 12/29/2010, Bad coverage very minor parietal cut, 2 (3%) directions excluded, 1 (#31) direction manually extracted; frontal distortion, distortion artifacts in axs 12-14, ax #31 geometric artifacts, "Z-stripe" artifacts in axs 15, 44-47, "bar" artifacts in axs 15-18, 20-21, 27-30, 33 | 01/05/2011, NRRD files - wrapping artifacts, ant. pre-frontal sig loss/posterior occipital sig loss, and distortion visible | 02/28/2011, not available on Track-HD website |
| 150736917 | Borderline, coverage (minor) | 12/01/2010 | 12/20/2010 | 12/29/2010, Bad coverage, cerebellum and parietal minor cuts; 3 (4%) directions excluded, 2 directions (#s 1, 30) manually extracted; clear frontal distortions, lateral distortions axs 12-13 (sag24), geometric artifacts axs 8, 28,30, "z-stripe" artifacts axs 21,22, "bar" artifacts in ax 14-18, 24-25, 30-32 | 12/29/2010, NRRD files - frontal distortions, wrapping artifacts; ant. pre-frontal sig loss/posterior occipital sig loss; "ladder" artifacts in axial 36 - visible in MD and RD possibly related to distortion | 02/03/2011, report uploaded, LONI upload not yet |
| 629891106 | Borderline, coverage (minor) | 12/01/2010 | 12/20/2010 | 12/28/2010, Bad coverage, 1 slice cut cerebellum; 4 (6%) directions excluded, 2 (#s 1, 31) gradients manually extracted; frontal distortions, "Z stripe" artifact axials 14-15; lateral distortions axs 7,8,12,14,15; "bar" artifacts 9-17, 21-23, 25, 29-35, 41; ax 19 distortion artifact | 12/28/2010, NRRD files - wrapping artifacts, posterior occipital signal loss | 02/10/2011, report uploaded, LONI upload not yet |
| 75341402X | Borderline, coverage (minor) | 12/01/2010 | 12/20/2010 | 12/23/2010, Bad coverage, minor cerebellum and superior cuts; 5 directions (7%) excluded, 5 directions manually extracted (#s 1, 8, 9, 31, 47); frontal distortion, lateral distortions art. axials 14-17, "bar" artifacts - axs 28-34, "Z stripe" artifact - axs 20,21, distortion arts. axs 9-12 | 12/23/2010, NRRD files - wrapping, ant. pre-front. sig loss, post. occipital sig loss, visible frontal distortion | 02/03/2011, report uploaded, LONI upload not yet |
| 340215444 | Borderline, coverage (minor) | 12/01/2010 | 12/01/2010 | 02/11/2011, Bad coverage 1 slice cut in parietal lobe & cerebellum; 3 (4%) exclusions, 5 manual extractions (#s 1,7,12,26,36); lateral distortions @ axs # 10-13, "bar" artifacts @ axs 20-27, 30, 33,37-38; "Z-stripe) @ ax 27, geo artifact @ ax 47 | 02/11/2011, NRRD files - wrapping artifacts, anterior pre-frontal sig loss/posterior occipital sig loss | 02/11/2011, report uploaded, LONI upload not yet |
| 250506098 | Borderline, coverage (minor) | 11/30/2010 | 12/20/2010 | 12/22/2010, Bad coverage, very minor cerebellum cut; 6 (8%) directions excluded, 1 (#30) manual exclusion; frontal distortions, "bar" artifacts visible in axials 14-31, distortions @ axs 7 & 11, geometrict artifacts @ axs 14 &26 | 12/22/2010, NRRD files - wrapping, anterior pre-frontal sig loss, posterior occipital sig loss, distortions throughout; MD - A/P running "Z-stripe" artifact visible at ax 31; FA - "Z-stripe" visible at ax 26 | 02/03/2011, report uploaded, LONI upload not yet |
| 24523100X | Borderline, coverage (minor) | 11/30/2010 | 12/20/2010 | 12/22/2010, Bad coverage, cerebellum minor cut; 8 (11%) directions excluded, 2 manual extractions (#s 16,51); frontal distortions, geometric artifacts (axs 9,10,19,20), "bar" artifacts (axs 18-25, 27) | 12/22/2010, NRRD files - distortion in inferior half of the brain, wrapping artifacts, ant. pre-front. signal loss, post. occipital signal loss; FA - "Z-stripe" visible near median in axial 20 | 02/03/2011, report uploaded, LONI upload not yet |
| 917951185 | Pass | 11/30/2010 | 12/20/2010 | 12/21/2010, 2 (3%) gradients excluded, one manual exclusion (# 32); frontal distortions, axials 16, 22-29, 33-35 - "bar" artifacts, ax 11 lateral distortion, ax 14 distortion artifacts, sagittal # 53 posterior vertical artifacts | 12/21/2010, NRRD files - wrapping artifacts, signal loss in anterior pre-frontal & posterior occipital areas; inferior axials also display much distortion | 02/22/2011, report uploaded, LONI upload not yet |
| 015955315 | Borderline, coverage (minor) | 11/30/2010 | 12/15/2010 | 12/20/2010, Bad coverage (minor), 1 parietal and 1 cerebellum slice cut; pre-frontal distortions; 6 (8%) exclusions + 1 manual extraction (#31); across-grad artifacts - "bar" artifacts visible from ax 19- ~ax 30; "Z stripe" artifact visible in axials 7,13,14,&23; possible geometric distortion on one side in ax 21 | 12/20/2010, Visible in NRRD files: wrapping, pre-frontal & posterior occipital lobe signal loss; axial 7 "z - stripe" is visible | 02/03/2011, report uploaded, LONI upload not yet |
| 52974600X | Borderline, coverage (minor) | 11/30/2010 | 12/08/2010 | 12/12/2010, Bad coverage 1 slice parietal/1 slice cerebellum missing; 5 (5%) directions excluded, 3 directions manually extracted (#s 4, 21, 24) | 12/14/2010, Wrapping artifacts, anterior pre-frontal signal loss, and distortion related striping visible @ ~ sagittal slice 55 in NRRD files; posterior occipital signal loss visible in AD, MD, RD | 02/03/2011, report uploaded, LONI upload not yet |
| 385258667 | Borderline, coverage (minor) | 11/30/2010 | 12/08/2010 | 12/10/2010, bad coverage 1 slice cerebellum cut; 4 (6%) directions excluded; 4 directions (#s 1,9,10,31) manually extracted; frontal distortions, axial 15 lateral distortions, bar artifacts @ axs 22-29, signal loss near lateral sulcus | 12/10/2010, NRRD files - wrapping artifacts, anterior pre-frontal sig loss/posterior occipital sig loss | 02/22/2011, report uploaded, LONI upload not yet |
| 012366774 | Borderline, coverage (minor) | 11/30/2010 | 12/08/2010 | 12/08/2010, Bad coverage, 1 slice cerebellum cut, 1 slice parietal cut; 13 (18%) excluded, 6 manually extracted (#s 1,8,39,40,45,51); possible sagittal artifact near lateral sulcus, lateral distortions (ax 15-17), frontal distortions and "bar" artifacts; also a "blurred stripe" artifact visible in sagittal view running sup/inf from parietal lobe | 12/08/2010, cingulum difficult to track continuously, but present; scalar diffusion (nrrd files) contain wrapping artifacts - possibly related to signal loss in anterior pre-frontal lobe and post. occipital lobe; In ax 16-18 "Z-stripe" artifact on L side, most visible in post. | 02/22/2011, report uploaded, LONI upload not yet |
| 59807499X | Borderline, coverage (minor) | 11/30/2010 | 12/03/2010 | 02/23/2011, bad coverage, minor cerebellum cut; 3 (4%) directions excluded, 2 directions (#s 1, 32) extracted; pre-frontal distortions, lateral distortions @ axs 8-10, bar artifacts @ axs 14-15, 18-20, 31-35, geometric artifact @ ax 27 | 02/23/2011, NRRD files - wrapping artifacts, slight anterior pre-frontal sig loss/posterior occiptial sig loss | 02/23/2011, report uploaded, LONI upload not yet |
| 288066870 | Pass | 11/30/2010 | 12/03/2010 | 12/06/2010, frontal distortions, 2 (3%) directions excluded; 1 direction (#31) manually extracted; bar artifacts @ axs 22,47; lateral distortions @ axs 5-22, geometric artifact @ ax 11; distortion @ ax 14 | 12/06/2010, NRRD files - wrapping artifacts, anterior pre-frontal sig loss/ posterior occipital sig loss artifact | 02/22/2011, report uploaded, LONI upload not yet |
| 566346239 | Borderline, coverage (minor) | 11/30/2010 | 12/02/2010 | 12/03/2010, Bad coverage, minor cerebellum cut, 2 (3%) directions excluded; 3 directions (#s 1, 16, 32) manually extracted; bar artifacts @ axs 12,13,17,19,26; distortion artifacts @ axs 12,14; geometric (rectangular) artifact in ax 15, "Z stripe" artifact @ ax 19 | 12/03/2010, elongated uncinate, NRRD files - anterior pre-frontal lobe sig loss/posterior occipital sig loss, Z stripe visible @ axs 28,34; | 02/23/2011, report uploaded, LONI upload not yet |
| 681352079 | Pass | 11/30/2010 | 12/01/2010 | 02/21/2011, 5 (7%) directions excluded, 1 direction (#29) manually extracted; lateral distortions @ axs 12-16, bar artifacts @ axs 18-19, 22-25, 30-33, 36-37, bar (shift) distortion @ axs 27-28, "Z stripe" @ ax 23 | 02/21/2011, NRRD files - "Z stripe" @ ax 25-26, "ladder" artifact @ ax 40, pre-frontal sig loss/posterior occipital sig loss; wrapping artifacts | 02/21/2011, report uploaded, LONI upload not yet |
| 639825229 | PASS | 11/30/2010 | 12/01/2010 | 12/02/2010, 1 (1%) direction excluded, 1 direction (#1) manually extracted; "Z stripe artifact" @ ax 14, bar artifacts @ axs 17, 29, lateral distortions @ axs 13,14, geometric artifacts @ axs 42, 49 | 12/02/2010, NRRD files - wrapping artifacts, pre-frontal sig loss/ posterior occipital sig loss artifact, "Z stripe" artifact @ axs 15,35 | 02/21/2011, report uploaded, LONI upload not yet |
| 184601805 | Borderline, coverage (minor) | 11/30/2010 | 12/01/2010 | 12/01/2010, Bad coverage, very minor cerebellum cut on one side; 1 (1%) direction excluded, 1 direction (#32) manually extracted; triangle-shaped artifact @ ax #15, "Z stripe" artifact @ axs 10, 21 | 12/02/2010, NRRD files - distortions; wrapping arts, anterior pre-frontal sig loss/posterior occipital sig loss; "Z stripes" visible in parts of the brain in axials 19-21 | 02/14/2011, report uploaded, LONI upload not yet |
| 616488557 | Borderline, coverage (minor) | 11/30/2010 | 12/01/2010 | 02/22/2011, Bad coverage, minor - 1 superior slice cut; 2 directions (#s 1,33) manually extracted; lateral distortions @ axs 13-18, "Z stripes" @ axs 16,17, 23; bar artifacts @ axs 22-24, 27-28,32-33,37, geometric artifacts @ axs 14, 45 | 02/22/2011, NRRD files - wrapping artifacts, anterior pre-frontal sig loss/posterior occipital sig loss artifact | 02/22/2011, report uploaded, LONI upload not yet |
| 600785158 | Borderline, coverage (minor) | 11/29/2010 | 11/30/2010 | 12/01/2010, Bad coverage, cerebellum minor cut; 6 directions (#s 1,33) manually extracted; lateral distortions @ axs 13-18, bar artifacts @ axs 20-21, 24-28, geometric artifact posteriorly in ax #15 | 02/17/2011, NRRD files - wrapping artifacts, some anterior pre-frontal sig loss/posterior occipital sig loss; | 02/17/2011, report uploaded, LONI upload not yet |
| 680987257 | Borderline, coverage (minor) | 11/29/2010 | 11/30/2010 | 02/22/2011, bad coverage, minor parietal cut; 8 (11%) directions excluded; lateral distortions @ axs 12-13, 15-18, bar artifacts @ axs 26-27,31,33-34; "Z-stripe" artifact @ ax 22 | 02/22/2011, NRRD files - wrapping artifacts, anterior pre-frontal sig loss/ posterior occipital sig loss, slight signal loss just superior cerebellum R side | 02/22/2011, report uploaded, LONI upload not yet |
| 768309063 | Borderline, coverage (minor) | 11/29/2010 | 11/29/2010 | 12/01/2010, Bad coverage (cerebellum very minor cut), 6 (8%) directions excluded + 1 manual extraction (#42); triangle shaped artifact visible @ ~axial slice 11 across many DWI gradients; some visible distortion | 12/01/2010, wrapping artifact, signal loss in anterior pre-frontal lobe; intense stripe running anteriorly/posteriorly in axial slices, "Z stripe" artifacts 16/17 on the L side in NRRD files | 02/23/2011, report uploaded, LONI upload not yet |
| 554346509 | Borderline, coverage (minor) | 11/29/2010 | 11/29/2010 | 02/21/2011, bad coverage minor cerebellum cut; 2 directions (#s 1, 33) manually extracted; bar artifacts @ axs 9-11, 19-24,26,42, lateral distortions @ ax 14, bar (shifting) artifacts @ axs 32-34, "Z-stripe" artifacts @ axs 14-16, | 02/21/2011, NRRD files - wrapping artifacts and frontal distortions; anterior pre-frontal sig loss/ posterior occipital sig loss artifact | 02/21/2011, report uploaded, LONI upload not yet |
| 341494566 | Pass | 11/29/2010 | 11/29/2010 | 12/01/2010, 5 (7%) directions excluded, 4 directions extracted (#s 1, 10, 32, 54) Distortion in pre-frontal lobe, area of low signal in sagittal 32 along lateral sulcus | 12/01/2010, Pre-frontal lobe signal loss in NRRD files, some distortion/signal loss in posterior occipital lobe, axs #24,25 show some "Z stripe" artifacts posteriorly | 12/14/2011, report uploaded, LONI upload not yet |
| 933580879 | Borderline, coverage (minor) | 11/29/2010 | 11/29/2010 | 02/15/2011, bad coverage, minor cerebellum cut; 7 directions (#s 1,2,24,33,43,62,63) manually extracted, lateral distortions @ axs 15,18-19; bar artifacts @ axs 9-11, 16-21,25-28,30-31; "Z-stripe" @ axs 21-23 | 02/15/2011, NRRD files - "Z stripe" artifacts visible @ axs 14-16; wrapping artifacts, anterior pre-frontal sig loss/posterior occipital sig loss artifact | 02/17/2011, report uploaded, LONI upload not yet |
| 323287434 | Pass | 11/29/2010 | 11/29/2010 | 11/29/2010, 2 (3%) excluded; lateral distortions @ axs 13-18; bar artifacts @ axs 23-30,33; | 02/11/2011, NRRD files - "Z stripe" @ ax 20, anterior pre-frontal sig loss/posterior occipital sig loss artifact, wrapping artifacts | 02/14/2011, report uploaded, LONI upload not yet |
| 69527731X | Borderline, coverage (minor) | 11/29/2010 | 02/22/2011 | 03/15/2011, 1 (1%) direction excluded; 1 direction (# 32) extracted, lateral distortions @ axs 9-13, bar artifacts @ axs 22-23,28-33; "Z stripe" @ ax 19, distortion (shifting) @ ax 17 | 03/15/2011, NRRD files - wrapping artifacts, anterior pre-frontal sig loss/some posterior occipital sig loss | |
| 453758028 | Borderline, coverage (minor) | 11/29/2010 | 11/29/2010 | 02/24/2011, Bad coverage, minor cerebellum cut; 2 (3%) directions excluded, 1 direction (#32) manually extracted; strong frontal distortions, lateral distortions @ axs 10, 12-14; bar artifacts @ axs 23-26, 31,33-36; "Z stripe" artifacts @ axs 15,22,25 | 02/24/2011, NRRD files - clear "Z stripe" laterally on one side @ ax 16, wrapping artifacts, slight anterior pre-frontal sig loss/posterior occipital sig loss artifact | 02/24/2011, Report uploaded, LONI upload not yet |
| 394429697 | Borderline, coverage (intermediate), signal loss | 09/01/2010 | 09/01/2010 | 09/01/2010, Bad coverage (intermediate), cerebellum minor cut, superior minor cut, temporal lobe minor cut; 5 (10%) directions excluded; 5 directions (2, 10, 17, 24, 43) manually extracted | 09/21/2010, Signal loss in internal capsule, left inferior longitudinal fasciculus, and some in splenium - most visible in FA | 09/21/2010, report uploaded, LONI upload not yet |
| 108668102 | Borderline, coverage (minor), signal loss | 09/01/2010 | 09/01/2010 | 09/01/2010, Bad coverage (minor), cerebellum minor cut, 1 slice superior cut; 5 directions manually extracted (#s 12, 15, 20, 23, 37) | 09/01/2010, some signal loss in splenium, slight loss in left inferior longitudinal fasciculus | 09/23/2010, report uploaded, LONI upload not yet |
| 069796172 | Borderline, coverage (minor) | 09/01/2010 | 09/01/2010 | 09/01/2010, Bad coverage (minor), cerebellum minor cut; 6 directions (#s 12, 14, 21, 25, 28, 48) manually excluded [10/15/10] | 09/01/2010, slight signal loss in middle cerebellar peduncle, axial 38 in MD, RD, & AD has an anomaly | 09/07/2010, report uploaded, LONI upload not yet |
| 08398960X | Borderline, coverage (minor) | 08/31/2010 | 08/31/2010 | 08/31/2010, Bad coverage (minor) cerebellum minor cut; 2 (6%) directions excluded, 1 direction (#10) manually excluded | 08/31/2010, possible motion artifacts in NRRD files | 11/04/2010, report uploaded, LONI upload not yet |
| 679528876 | Borderline, coverage (severe) | 08/26/2010 | 08/26/2010 | 08/26/2010, Bad coverage (severe), cerebellum minor cut, inferior temporal lobe cut, superior minor cut | 08/26/2010, slight signal loss in left inferior longitudinal fasciculus | 09/09/2010, report uploaded, LONI upload not yet |
| 839253794 | Borderline, coverage (minor) | 08/24/2010 | 08/24/2010 | 08/24/2010, Bad coverage (minor), cerebellum halfway cut, inf. temporal lobe ~1 slice cut; 1 (3%) direction excluded | 08/24/2010, Possible motion in NRRD files, small lesion or signal loss in right external capsule, GM artifact in pre-frontal lobe | 11/04/2010, report uploaded, LONI upload not yet |
| 252535668 | Borderline, coverage (intermediate) | 08/24/2010 | 08/24/2010 | 08/24/2010, Bad coverage (intermediate), cerebellum major cut, inf. temporal lobe minor cut; 4 (12%) directions excluded | 08/24/2010, possible motion in the NRRD files, GM artifact in pre-frontal lobe | 11/04/2010, report uploaded, LONI upload not yet |
| 257482956 | Borderline, coverage (minor) - directionality in Slicer | 08/10/2010 | 08/10/2010 | 08/10/2010, Bad coverage (minor), cerebellum minor cut; 3 (9%) directions excluded, 1 direction (#20) manually extracted [10/25/10] | 10/25/2010, Possible motion in NRRD files, unusual directionality in Slicer - difficulties tracking IC, cingulum and parts of corpus callosum, most likely due to anatomy, GM artifact in pre-frontal lobe | 11/04/2010, report uploaded, LONI upload not yet |
| 731214938 | Borderline, coverage (intermediate) | 08/10/2010 | 08/10/2010 | 08/10/2010, Bad coverage (intermediate), cerebellum major cut; 1 (3%) direction excluded | 08/10/2010, Possible motion artifacts in NRRD files, GM artifact in pre-frontal lobe | 09/02/2010, report uploaded, LONI upload not yet |
| 40782549X | Borderline, coverage (minor) | 08/10/2010 | 08/10/2010 | 08/10/2010, Bad coverage (minor) cerebellum halfway cut; 11 (17%) directions excluded | 08/10/2010, Pass; GM artifact in pre-frontal lobe | 08/17/2010, Report uploaded, file not yet uploaded to LONI |
| 222456485 | Borderline, coverage (minor); unusual diffusion tractography | 08/02/2010 | 08/02/2010 | 10/27/2010, Bad coverage (minor) cerebellum minor cut; 23 (35%) directions excluded, 5 directions (#s 1, 22, 23, 31, 39) manually extracted | 10/27/2010, possible motion in NRRD files, unusual directionality in Slicer, absent uncinate & arcuate, unusual internal capsule & splenium; GM artifact in pre-frontal lobe | 10/27/2010, Report uploaded, file not yet uploaded to LONI [original report uploaded 8/3/10, Failure reversed] |
| 65397646X | Borderline, coverage (immediate) | 07/26/2010 | 07/26/2010 | 07/26/2010, Bad coverage (intermediate) Cerebellum major cut, inferior temporal lobe minor cut, 4 (6%) directions excluded, 7 (# 4, 8, 14, 18, 31, 34, 37) manually extracted | 07/29/2010, Possible motion artifacts in NRRD files, slight noise in brainstem; GM artifact in pre-frontal lobe | 09/21/2010, report uploaded, LONI upload not yet |
| 978504512 | Borderline, coverage (minor) | 07/26/2010 | 07/26/2010 | 07/26/2010, Bad coverage (minor) Cerebellum half way cut, 11 (17%) directions excluded, 2 directions (#s 4, 31) manually extracted | 07/29/2010, possible motion artifacts in NRRD files; GM artifact in pre-frontal lobe | 09/22/2010, report uploaded, LONI upload not yet |
| 511102082 | Borderline, (intermediate) | 07/26/2010 | 07/26/2010 | 07/26/2010, Bad coverage (intermediate) Cerebellum major cut, inferior temporal lobe minor cut, 4 (6%) directions excluded, 3 directions (#s 3, 7, 11) manually extracted | 07/29/2010, GM artifact in pre-frontal lobe | 09/22/2010, report uploaded, LONI upload not yet |
| 874151633 | Borderline, coverage (minor) | 07/26/2010 | 07/26/2010 | 07/26/2010, Bad coverage (minor) Cerebellum halfway cut, 6 (9%) excluded; 4 directions (#s 11, 34, 43, 53) manually excluded | 07/29/2010, possible motion artifacts in NRRD files | 09/22/2010, report uploaded, LONI upload not yet |
| 511926591 | Borderline, coverage (minor) | 07/19/2010 | 07/19/2010 | 07/19/2010, Bad coverage (minor) Cerebellum minor cut | 07/27/2010, Possible motion artifacts in NRRD files | 09/02/2010, report uploaded, LONI upload not yet |
| 611823795 | Borderline, coverage (intermediate) | 07/19/2010 | 07/19/2010 | 07/19/2010, Bad coverage (intermediate) Cerebellum major cut, inferior temporal lobe tip cut, 1 (1.5%) direction excluded | 07/27/2010, Slight noise in brain stem and left inferior temporal lobe | 09/02/2010, report uploaded, LONI upload not yet |
| 621782311 | Borderline, coverage (intermediate) | 07/16/2010 | 07/16/2010 | 07/19/2010, Bad coverage (intermediate) Cerebellum minor cut, inferior temporal lobe 1 slice cut, and superior ~2-3 slices cut, 4 (8%) directions excluded | 07/26/2010, slight noise in brain stem and inferior internal capsule, FA | 09/02/2010, report uploaded, LONI upload not yet |
| 060950263 | Borderline, coverage (minor) | 07/16/2010 | 07/16/2010 | 07/19/2010, Bad coverage (minor) cerebellum minor cut, superior 1-2 slices cut, 2 (4%) directions excluded | 07/26/2010, slight noise in brainstem & internal capsule | 08/31/2010, report uploaded, LONI upload not yet |
| 104661605 | Borderline, coverage (intermediate) | 07/16/2010 | 07/16/2010 | 07/19/2010, Bad coverage (intermediate) inferior cerebellum cut, inferior tip temporal lobe cut | 07/23/2010, Slight noise in brainstem, FA | 08/31/2010, report uploaded, LONI upload not yet |
| 605426141 | Borderline, coverage (intermediate) | 07/14/2010 | 07/16/2010 | 07/16/2010, Bad coverage (intermediate) Both cerebellum and sup. parietal lobe minor cuts, possible slice missing in tip of inferior temporal lobe, 4 (8%) directions excluded; 3 directions (31, 39, 40) manually excluded | 09/20/2010, Signal loss in internal capsule, slight noise in inferior longitudinal fasciculus/boundaries of lateral ventricles | 09/20/2010, report uploaded, LONI upload not yet |
| 466432484 | Borderline, coverage (intermediate) | 07/13/2010 | 07/16/2010 | 07/19/2010, Bad coverage (intermediate) Cerebellum half way cut, right inferior temporal lobe tip minor cut, 12 (18%) directions excluded | 07/28/2010, unusual tract architecture and directionality in Slicer; GM artifact in pre-frontal lobe | 09/22/2010, report uploaded, LONI upload not yet |
| 576848717 | Borderline, coverage (intermediate) | 07/13/2010 | 07/16/2010 | 07/19/2010, Bad coverage (intermediate) Cerebellum major cut, inferior temporal lobe minor cut, 3 (5%) directions excluded; 4 directions excluded manually (6, 36, 43, 46) | 09/17/2010, Unusual directionality in Slicer, coronal section and most of splenium missing, very difficult to track any genu, FA/RD - slight signal loss in middle cerebellar peduncle, internal capsule; GM artifact in pre-frontal lobe | 09/17/2010, report uploaded, LONI upload not yet |
| 741254703 | Borderline, coverage (minor) | 07/13/2010 | 07/16/2010 | 07/16/2010, Bad coverage (minor) cerebellum halfway cut, 2 (3%) directions excluded, 1 direction (# 34) manually extracted | 07/27/2010, possible motion artifacts in NRRD files, slight noise in anterior frontal lobe; GM artifact in pre-frontal lobe | 09/22/2010, report uploaded, LONI upload not yet |
| 499922022 | Borderline, coverage (minor) | 07/13/2010 | 07/16/2010 | 07/16/2010, Bad coverage (minor) cerebellum half way cut, 9 (14%) directions excluded, 1 direction manually extracted (#7) | 07/28/2010, Slight noise in middle cerebellar peduncle in FA, possible motion artifacts in NRRD files; GM artifact in pre-frontal lobe | 08/31/2010, report uploaded, LONI upload not yet |
| 260725083 | Borderline, coverage (intermediate) | 07/06/2010 | 07/16/2010 | 07/16/2010, Bad coverage (intermediate) cerebellum major cut, 3 (9%) directions excluded | 07/23/2010, FA noise in internal capsule/brainstem; GM artifact in pre-frontal | 08/31/2010, report uploaded, LONI upload not yet |
| 352325585 | Borderline, coverage (minor) | 07/06/2010 | 07/15/2010 | 07/16/2010, 50% surviving data, of original 2 datasets, only second usable, Bad coverage (minor) cerebellum minor cut | 07/28/2010, Possible motion artifacts in NRRD files; anomaly in pre-frontal GM | 11/19/2010, report uploaded, LONI upload not yet |
| 936254810 | Fail | 07/06/2010 | 07/16/2010 | 07/16/2010, Failed, 12 (36%) of directions excluded not meeting minimum standard of 30%, visually could exclude more | 07/16/2010, Report uploaded, LONI not uploaded yet | |
| 000517510 | Borderline, coverage (severe) | 07/01/2010 | 07/15/2010 | 07/15/2010, Bad coverage (severe) Cerebellum and inferior temporal lobe minor cuts, superior cut (~4 slices) | 07/23/2010, Unusual CC, splenium missing | 08/25/2010, report uploaded, LONI upload not yet |
| 020527191 | Borderline, coverage (minor) | 07/01/2010 | 07/14/2010 | 07/16/2010, Bad coverage (minor) Cerebellum halfway cut, 1 (2%) direction excluded | 07/22/2010 | 08/25/2010, report uploaded, LONI upload not yet |
| 03831089X | Borderline, coverage (severe) | 07/01/2010 | 07/14/2010 | 07/16/2010, Bad coverage (severe) Cerebellum cut and most of temporal lobe cut; 8 directions (#s 7, 16, 17, 19, 22, 23, 42, 50) manually extracted | 07/28/2010, Slight noise in brain stem and internal capsule in FA | 09/23/2010, report uploaded, LONI upload not yet |
| 203339470 | Borderline, coverage (intermediate) | 07/01/2010 | 07/14/2010 | 07/15/2010, Bad coverage (intermediate) cerebellum minor cut & sup. cut (~3 slices), 1 (2%) direction excluded | 07/23/2010, Slight noise in brainstem FA | 08/25/2010, report uploaded, LONI upload not yet |
| 574798176 | Borderline, coverage (minor) | 07/01/2010 | 07/14/2010 | 07/15/2010, Bad coverage (minor) superior parietal minor cut, 1 (2%) direction excluded; 4 directions (11, 39, 45, 49) manually excluded | 09/20/2010, slight signal loss in middle cerebellar peduncle and left internal capsule | 09/20/2010, report uploaded, LONI upload not yet |
| 748377562 | Borderline, coverage (severe) | 07/01/2010 | 07/14/2010 | 07/15/2010, Bad coverage (severe) superior major cut (~5 slices) cerebellum minor cut | 07/23/2010, Noise in internal capsule and brainstem | 08/25/2010, report uploaded, LONI upload not yet |
| 801679448 | Borderline, coverage (intermediate) | 07/01/2010 | 07/14/2010 | 07/15/2010, Bad coverage (intermediate) cerebellum major cut, inferior temporal lobe minor cut, 1 (1.5%) direction excluded | 07/22/2010, slight noise in inferior frontal lobe and right inferior longitudinal fasciculus; GM artifact in pre-frontal lobe | 08/31/2010, report uploaded, LONI upload not yet |
| 432196753 | Borderline, coverage (minor) | 06/30/2010 | 07/14/2010 | 07/14/2010, Bad coverage (minor) cerebellum major cut, 5 (8%) directions excluded, 2 (slice #s 3 & 45) manually excluded | 09/16/2010, Possible motion in NRRD files | 09/16/2010, report uploaded, LONI upload not yet |
| 642962953 | Borderline, coverage (severe) | 06/30/2010 | 07/14/2010 | 07/15/2010, Bad coverage (severe) cerebellum major cut, inferior temporal lobe major cut | 07/22/2010 | 08/25/2010, report uploaded, LONI upload not yet |
| 906624638 | Borderline, coverage (severe) | 06/30/2010 | 07/14/2010 | 07/15/2010, Bad coverage (severe) major superior cut (5-6 slices), minor cerebellum cut, 1 (2%) direction excluded | 07/23/2010, Noise in FA - internal capsule/brainstem | 08/24/2010, report uploaded, LONI upload not yet |
| 919415581 | Borderline, coverage (intermediate) | 06/30/2010 | 07/14/2010 | 07/15/2010, Bad coverage (intermediate) superior 4-5 slices cut and cerebellum minor cut, 2 (4%) directions excluded, 6 directions (#s 7, 9, 10, 13, 21, 23) manually extracted [10/19/10] | 07/23/2010, Noise in FA - internal capsule/brainstem | 08/24/2010, report uploaded, LONI upload not yet |
| 026038129 | Borderline, coverage (intermediate) | 06/29/2010 | 06/30/2010 | 07/16/2010, Bad coverage (intermediate) Cerebellum halfway cut, inferior temporal lobe minor cut, 10 (15%) directions excluded; 3 directions (4, 41, 51) manually excluded | 09/20/2010, Possible motion in NRRD files; GM artifact in pre-frontal lobe | 09/21/2010, report uploaded, LONI upload not yet |
| 405382885 | Borderline, coverage (minor) | 06/29/2010 | 07/14/2010 | 07/14/2010, Bad coverage (minor) cerebellum minor cut, 4 (6%) directions excluded, 1 direction (#7) manually excluded | 09/15/2010, Possible motion artifacts in NRRD files; GM artifact in pre-frontal lobe | 09/16/2010, report uploaded, LONI upload not yet |
| 788429419 | Borderline, coverage (minor) | 06/29/2010 | 07/14/2010 | 07/14/2010, Bad coverage (minor) cerebellum half way cut, 13 (20%) directions excluded; 1 direction (# 27) manually extracted | 07/27/2010, Possible motion artifacts in NRRD files; GM artifact in pre-frontal lobe | 09/21/2010, report uploaded, LONI upload not yet |
| 823955340 | Borderline, coverage (intermediate) | 06/29/2010 | 07/14/2010 | 07/14/2010, Bad coverage (intermediate), cerebellum major cut, inferior temporal lobe minor cut, 16 (24%) directions excluded, 1 direction (# 28) manually extracted | 07/28/2010, Possible motion artifacts in NRRD files; GM artifact in pre-frontal lobe | 09/22/2010, report uploaded, LONI upload not yet |
| 894925431 | Borderline, coverage (minor) | 06/29/2010 | 07/14/2010 | 07/14/2010 Bad coverage (minor), both cerebellum and sup. slice minor cut | 07/21/2010, Signal loss middle section inferior longitudinal fasciculus, brain stem, and inferior internal capsule | 08/24/2010, report uploaded, LONI upload not yet |
| 925743230 | Borderline, coverage (intermediate), signal loss in anterior/inferior prefrontal lobe | 06/29/2010 | 07/13/2010 | 07/14/2010, Bad coverage (intermediate), cerebellum minor cut, inferior temporal lobe minor cut, superior parietal lobe minor cut, 2 (4%) directions excluded | 07/14/2010, absent arcuate, signal loss in anterior/inferior prefrontal lobe | 07/14/2010, report uploaded, LONI upload not yet |
| 097360545 | Borderline, coverage (minor) | 06/22/2010 | 06/22/2010 | 06/22/2010, Bad coverage (minor), cerebellum minor cut, 4 (12%) directions excluded | 06/22/2010, Artifact in left hemisphere, just under CC in sagittal view, visible in slices ~15-36 in axial view in DTIPrep and NRRD files; possible motion in Nrrd files [11/04/10] | 11/04/2010, report uploaded, LONI upload not yet |
| 194338142 | Borderline, coverage (minor) | 06/22/2010 | 06/22/2010 | 06/22/2010, Bad coverage (minor), cerebellum half way cut, 5 (15%) directions excluded | 06/22/2010, GM artifact in pre-frontal lobe | 08/23/2010,report uploaded, LONI upload not yet |
| 265897681 | Borderline, coverage (minor) | 06/22/2010 | 06/22/2010 | 06/22/2010, Bad coverage (minor), cerebellum minor cut. 3 (9%) directions excluded | 06/22/2010, nearly absent left arcuate, also major issues with cingulum bundle; GM artifact in pre-frontal lobe | 08/23/2010, report uploaded, LONI upload not yet |
| 655720793 | Borderline, coverage (minor) | 06/22/2010 | 06/22/2010 | 06/22/2010, Bad coverage (minor), cerebellum minor cut. 13 (19%) directions excluded | 06/22/2010, GM artifact in pre-frontal lobe | 08/17/2010, report uploaded, LONI upload not yet |
| 341438293 | Borderline, coverage (minor) | 06/15/2010 | 06/16/2010, 2 datasets, combined into a single dataset manually | 06/16/2010, Bad coverage (minor) cerebellum, 16 (24%) directions excluded, but still enough gradients thanks to the extra scan; 3 directions manually extracted (#s 8, 31, 41) | 06/16/2010 | 09/23/2010, report uploaded, LONI upload not yet |
| 235530971 | Borderline, coverage (intermediate) | 06/11/2010 | 06/16/2010 | 06/16/2010, Bad coverage (intermediate), both cerebellum. inf temporal lobe and sup. parietal slice cut; 10 directions (#s 10,12,14,16,17,29,32,36,38,39) manually extracted | 06/16/2010, Pass | 08/17/2010, report uploaded, LONI upload not yet |
| 261556323 | FAIL, diagonal artifact in NRRD files | 06/11/2010 | 06/16/2010 | 06/16/2010, Bad coverage (minor), both cerebellum and sup. parietal slice cut; 4 directions (#s 24, 31, 32, 33) manually extracted | 10/27/2010, Fail, acquisition error, diagonal artifact visible in several axial slices in NRRD files | 10/27/2010, report uploaded, LONI upload not yet [08/17/2010, original report of Borderline uploaded] |
| 988505623 | Borderline, coverage (minor) | 06/11/2010 | 06/16/2010 | 06/16/2010, Bad coverage (minor), both cerebellum and sup. parietal slice cut; 5 directions (#s 8, 9, 27, 29, 49) manually extracted | 06/16/2010, FA- slight signal loss in MCP and splenium | 08/17/2010, report uploaded, LONI upload not yet |
| 292115316 | Fail | 06/10/2010 | 06/15/2010 | 06/15/2010, BAD, too much motion in baseline, 22 DWIs rejected (including baseline) | 06/25/2010, report uploaded, LONI upload not yet | |
| 544679981 | Borderline, coverage (minor) | 06/10/2010 | 06/15/2010, 2 datasets, combined into a single dataset manually | 06/15/2010, 6 (9%) gradients excluded, Bad coverage (intermediate), considerable section of cerebellum is missing | 06/15/2010, GM artifact in pre-frontal lobe | 07/14/2010, report uploaded, LONI upload not yet |
| 644452956 | FAIL | 06/07/2010 | 06/14/2010 | 06/14/2010, FAILed, 4 directions excluded in DTIPrep, 13 directions manually extracted (#s 1, 2, 3, 5, 7, 8, 9, 11, 12, 13, 15, 18, 20) = 17 (33%) directions excluded | 06/14/2010 | 06/25/2010, report uploaded, LONI upload not yet [11/19/10 changed to fail] |
| 898719681 | Fail | 06/07/2010 | 06/14/2010 | 06/14/2010, FAIL, 17 directions (33%) deemed appropriate for manual extractions, Direction #s (1, 4, 6, 12, 13, 14, 15, 16, 20, 21, 22, 24, 26, 28, 30, 35, 39) | 06/14/2010 | 06/25/2010, report uploaded, LONI upload not yet [11/18/10 - changed to FAIL] |
| 970303450 | Borderline, coverage (minor) | 06/04/2010 | 06/14/2010 | 06/14/2010, bad coverage(minor), one more slice in each inferior and superior direction would be needed, 1 direction (2%) excluded, 4 directions (#s 14, 30, 33, 44) manually extracted [11/11/10] | 06/14/2010, very slight signal loss, left internal capsule; possible wrapping artifacts in NRRD files | 06/25/2010, report uploaded, LONI upload not yet |
| 255614373 | FAIL | 06/04/2010 | 06/04/2010 | 06/04/2010, FAIL, 2 directions excluded by DTIPrep + 14 directions manually extracted (#s 1, 2, 4, 5, 6, 7, 13, 14, 18, 20, 22, 24, 26, 48) = 16 (31%) excluded | 06/04/2010, | 06/25/2010, report uploaded, LONI upload not yet, [11/19/10 changed to FAIL] |
| 511596898 | Borderline, coverage (intermediate) | 06/04/2010 | 06/08/2010 | 06/08/2010, bad coverage in upper head region, borderline, 1 direction (2%) excluded, 5 directions (#s 8, 15, 18, 41, 45) manually extracted | 06/08/2010, arcuate on the left not trackable, some signal loss in right pre-frontal lobe and MCP - FA | 06/25/2010, report uploaded, LONI upload not yet |
| 37445615X | Borderline, coverage (intermediate) | 06/02/2010, first auto download | 06/03/2010 | 06/03/2010, Bad first slice (excluded), inferior tip of temporal lobe is cut; 2 directions automatic excluded; 12 directions (#s 3,8,9,12,14,15,16,19,24,25,43,44) manually extracted = 14 total exclusions (27%) | 11/16/2010, Coronal section of CC difficult to track superiorly, FA- slight signal loss R pre-frontal lobe, left IC and inferior longitudinal fasciculus | 06/25/2010, report uploaded, LONI upload not yet |
in first column, use color #ff0000 (red) for failing datasets, color #44ff00 (green) for successful datasets and yellow (#ffff00) for borderline datasets.
Data acquired before 06/01/2010
Data is worked up one by one upon available time.
| SubjectID | Status | Downloaded | Conversion to NHDR | DTIPrep pass | Visual QC pass | Upload of dataset |
| Before 06/01 | ============ | ============ | ============ | ============ | ============ | ============ |
| 066092953 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 10/07/2010, Bad coverage (minor), cerebellum minor cut; 5 (8%) directions excluded, 3 directions [#s 5, 34, 36] manually extracted | 10/08/2010, Possible motion in NRRD files, GM artifact in pre-frontal lobe | 10/08/2010, Report uploaded, LONI upload not yet |
| 065036777 | Borderline, covearage (intermediate) | 06/02/2010 | 06/21/2010 | 10/07/2010, Bad coverage (intermediate) 1 slice superior cut and minor cerebellum and temporal lobe cuts & wrapping artifacts in axials 1-2; 1 (2%) direction excluded; 3 directions (#s 12, 20, 34) manually extracted | 10/07/2010, Slight signal loss in L inferior longitudinal fasciculus | 10/07/2010, Report uploaded, LONI upload not yet |
| 566677965 | Borderline, coverage (minor) | 06/02/2010 | 11/10/2010 | 11/11/2010, Bad coverage (minor), cerebellum minor cut; 3 directions (4%) excluded | 11/11/2010, Pass | 11/15/2010, Report uploaded, LONI upload not yet |
| 961041497 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/31/2010, Bad coverage (intermediate), temporal lobe tips cut, superior cut ~3-4 slices, 2 directions (#s 27, 39) manually extracted [10/19/10] | 09/01/2010, signal loss in middle cerebellar peduncle, FA - slight signal loss in left inferior longitudinal fasciculus | 09/09/2010, Report uploaded, LONI upload not yet |
| 934026854 | Borderline | 06/02/2010 | 06/21/2010 | 08/30/2010, Bad coverage (minor) cerebellum minor cut; possible geometric distortion anterior parietal lobe, 7 (11%) directions excluded | 08/30/2010, possible motion in NRRD files, GM artifact in pre-frontal lobe | 11/09/2010, Report uploaded LONI upload not yet |
| 830135905 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 08/30/2010, Bad coverage (minor), cerebellum minor cut, temporal lobe tips cut | 08/30/2010, slight noise in middle cerebellar peduncle & a posterior/superior branch of the left arcuate | 09/09/2010, Report uploaded, LONI upload not yet |
| 867249739 | FAIL | 06/08/2010 | 06/21/2010 | 08/27/2010, FAIL; 11 (33%) of directions excluded | 11/18/2010, Report uploaded, LONI upload not yet | |
| 834082962 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 08/26/2010, Bad coverage (minor), cerebellum minor cut | 08/31/2010, possible motion in NRRD files; GM artifact in pre-frontal lobe | 09/09/2010, Report uploaded, LONI upload not yet |
| 826350503 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/27/2010, Bad coverage (intermediate), cerebellum minor cut; superior ~2-3 slices cut, 2 directions (#s 36, 40) manually extracted [10/14/10] | 08/27/2010, slight signal loss in brainstem, FA - slight signal loss in borders of lateral ventricles | 10/14/2010, Report uploaded, LONI upload not yet |
| 780339496 | Borderline, coverage (intermediate) | 06/02/2010 | 06/18/2010, | 08/25/2010, Bad coverage (intermediate), cerebellum major cut; temporal lobe tips cut (~1 slice); 6 (9%) directions excluded | 08/26/2010, possible motion in NRRD files; GM artifact in pre-frontal lobe | 09/09/2010, Report uploaded, LONI upload not yet |
| 779728803 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010, | 08/25/2010, Bad coverage (minor), very minor cerebellum and superior cuts; 1 (2%) excluded; 12 directions (#s 3, 6, 8, 10, 11, 12, 13, 15, 20, 21, 28, 29) manually extracted [10/15/10] = 25% total excluded | 10/15/2010, FA - very slight signal loss in left IC & inferior longitudinal fasciculus | 10/15/2010, Report uploaded, LONI upload not yet |
| 755907833 | FAIL | 06/02/2010 | 06/21/2010 | 08/25/2010, FAIL, 14 (27%) directions excluded; at least 6 directions (#s 7, 19, 24, 28, 29, 33) could definitively qualify for manual extraction bringing total excluded to 20 (39%) directions exlcuded; Bad coverage (minor), minor superior parietal slice cut; | 08/25/2010, Pass | 10/08/2010, Report uploaded, LONI upload not yet |
| 722113146 | Pass | 06/02/2010 | 11/11/2010 | 11/11/2010, 4 (6%) directions excluded, 2 directions (#s 19, 45) manually extracted; wrapping artifacts | 11/11/2010, Pass | 11/15/2010, Report uploaded, LONI upload not yet |
| 709053559 | Borderline, coverage (intermediate), signal loss & artifacts in FA | 06/02/2010 | 06/21/2010 | 08/25/2010, Bad coverage (intermediate), cerebellum major cut, right tip of inferior lobe cut; 2 directions (#s 27,40) manually extracted [10/1/10] | 08/25/2010, FA - slight signal loss in left Internal capsule/arcuate; wrapping artifacts in first few slices, some distortion in slice 26 | 10/01/2010, Report uploaded, LONI upload not yet |
| 689520828 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/25/2010, Bad coverage (intermediate) cerebellum minor cut, inferior temporal lobe cut; 3 (6%) directions excluded | 08/25/2010, FA - slight signal loss in cerebellar peduncle | 09/09/2010, Report uploaded, LONI upload not yet |
| 614921497 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/23/2010, Bad coverage (intermediate), cerebellum minor cut, inferior temporal lobe cut; 5 directions (#s 4, 5, 23, 27, 48) manually excluded [10/19/10] | 08/27/2010, slight signal loss in the left arcuate | 09/09/2010, Report uploaded, LONI upload not yet [10/19/10 edit] |
| 543829595 | Borderline | 06/02/2010 | 06/21/2010 | 08/23/2010, Bad coverage (minor), cerebellum minor cut; 8 (12%) directions excluded | 08/23/2010, Possible motion in NRRD, signal loss in left cerebral peduncle/Interal capsule; GM artifact in pre-frontal lobe | 09/09/2010, Report uploaded, LONI upload not yet |
| 535845735 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 08/23/2010, Bad coverage (minor), 1 cerebellum & 1 superior slice missing; 2 (4%) directions excluded | 08/23/2010, Slight signal loss in splenium | 09/09/2010, Report uploaded, LONI upload not yet |
| 519841602 | Borderline, coverage (severe)/signal loss | 06/02/2010 | 06/21/2010 | 08/23/2010, Bad coverage (severe), cerebellum halfway cut, inferior temporal lobe cut; 4 (8%) directions excluded | 08/23/2010, Signal loss in internal capsule, particularly on the left side | 09/09/2010, Report uploaded, LONI upload not yet |
| 511523238 | Borderline, coverage (minor) | 06/03/2010 | 06/21/2010 | 08/20/2010, Bad coverage cerebellum minor cut, 1 slice superior cut; 4 directions (#s 26, 30, 35, 39) manually extracted [10/19/2010] | 08/20/2010, slight lesion or signal loss in left cerebellum | 09/09/2010, Report uploaded, LONI upload not yet [10/19/10 - edit] |
| 501296799 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 08/20/2010, Bad coverage (minor), superior minor cut; 2 (4%) directions excluded; 2 directions (#s 6,7) manually extracted [10/1/10] | 08/20/2010, Pass | 10/01/2010, Report uploaded, LONI upload not yet |
| 477657055 | Borderline, coverage (minor), signal loss | 06/02/2010 | 06/21/2010 | 08/20/2010, Bad coverage (minor), cerebellum minor cut, inf. temporal lobe tip cut; 3 (6%) directions excluded | 08/20/2010, Slight noise in splenium and left arcuate, internal capsule | 09/09/2010, Report uploaded, LONI upload not yet |
| 457557923 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/19/2010, Bad coverage (intermediate), minor cerebellum cut & ~3 superior slices cut; 4 (8%) directions excluded; 9 directions (#s 5,16,17,19,23,31,35,38,39) manually extracted [9/29/10] | 08/19/2010, FA - slight noise in splenium | 09/29/2010, Report uploaded, LONI upload not yet |
| 419686535 | Borderline, coverage (minor) | 11/11/2011 | 11/11/2011 | 02/17/2011, Bad coverage, minor cerebellum and superior cuts; 3 (4%) directions excluded, 1 direction (#31) manually extracted; lateral distortions @ axs 10-18, bar artifacts @ axs 22-24, 26, 32-33, 39; distortion (shifting) artifact @ ax # 27; "Z stripe" artifact @ axs 20, 22-23, 25 | 02/17/2011, NRRD files - some shadow on pre-frontal left side between skull and brain possibly anatomy, ant. pre-frontal sig loss/post occ. sig loss, "Z-stripe" @ ax 15 | 02/17/2011, report uploaded, LONI upload not yet |
| 410568432 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/19/2010, Bad coverage (intermediate), minor cuts: cerebellum, inferior temporal lobe, superior; 4 (8%) directions excluded; 11 directions (#s 4,9,11,13,15,16,26,32,35,39,43) manually extracted [10/15/10] | 10/18/2010, FA- some signal loss visible in left Internal Capsule | 10/18/2010, Report uploaded, LONI upload not yet |
| 406054927 | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 08/19/2010, Bad coverage (minor) cerebellum minor cut; 3 (5%) directions excluded, 1 direction (#45) manually extracted [10/1/10] | 08/19/2010, Possible motion in NRRD files, GM artifact in pre-frontal lobe | 10/01/2010, Report uploaded, LONI upload not yet |
| 365619028 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/19/2010, Bad coverage (intermediate) cerebellum major cut, inferior temporal lobe cut; 6 (9%) directions excluded, 2 directions (#s 2,3) manually extracted [10/1/10] | 08/19/2010, slight motion in NRRD files | 10/01/2010, Report uploaded, LONI upload not yet |
| 365088638 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 08/19/2010, Bad coverage (minor) very minor cerebellum cut; "wrapped" artifacts in axial slice 0; 5 (10%) directions excluded | 08/19/2010, Pass | 09/08/2010, Report uploaded, LONI upload not yet |
| 353346828 | Borderline, coverage (minor) | 06/02/2010 | 11/11/2010 | 11/11/2010, Bad coverage (minor) 1 cerebellum slice cut, 1 parietal slice cut, 3 directions excluded, 3 directions (#s 20, 24, 31) manually extracted | 11/11/2010, Signal loss/distorton pre-frontal lobe in NRRD files | 11/15/2010, Report uploaded, LONI upload not yet |
| 352627683 | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 08/19/2010, Bad coverage (minor), cerebellum minor cut, superior 1 slice cut; 3 (5%) directions excluded | 08/19/2010, Possible motion artifacts in NRRD files, axial 1 & 64 anamolies; GM artifact in pre-frontal lobe | 09/08/2010, Report uploaded, LONI upload not yet |
| 333956667 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/18/2010, Bad coverage (intermediate), cerebellum major cut, inf. temp. lobe 1 slice cut | 08/18/2010, possible motion artifacts in NRRD files | 09/08/2010, Report uploaded, LONI upload not yet |
| 320399079 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 08/18/2010, Bad coverage (minor), cerebellum minor cut; 14 (21%) of directions excluded | 08/18/2010, possible motion artifacts in NRRD files | 09/08/2010, Report uploaded, LONI upload not yet |
| 308615475 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 08/17/2010, Bad coverage (minor), superior parietal ~2 slices cut | 08/17/2010, Pass | 09/08/2010, Report uploaded, LONI upload not yet |
| 252965812 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/17/2010, Bad coverage (intermediate), major cerebellum and inferior temporal lobe cuts; 3 (5%) directions excluded, 2 directions (#s 10, 35) manually extracted [10/1/10] | 08/17/2010, possible motion artifacts in NRRD files | 10/01/2010, Report uploaded, LONI upload not yet |
| 245692548 | FAIL | 06/02/2010 | 06/21/2010 | 08/17/2010, FAIL, Uneven distribution after DTIPrep automatic QC, 20 (30.3%) directions excluded - [2 scan Philips = 60% threshold] | 10/27/2010, Report uploaded, LONI upload not yet | |
| 209569713 | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 08/16/2010, Bad coverage (minor) cerebellum minor cut, 8 (12%) directions excluded; 1 direction (#36) manually extracted after automatic QC [9/30/10] | 08/17/2010, possible motion artifacts in NRRD files | 09/30/2010, Report uploaded, LONI upload not yet |
| 203312224 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/16/2010, Bad coverage (intermediate), cerebellum major cut, right inf. temporal lobe tip cut | 08/17/2010, possible motion artifacts in NRRD files, slight signal loss in brainstem | 11/04/2010, Report uploaded, LONI upload not yet |
| 201872498 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 08/16/2010, Bad coverage (minor), cerebellum minor cut, superior minor cut; 4 (8%) directions excluded; 5 directions (#s 20, 25, 34, 36, 46) manually extracted [9/29/10] | 08/16/2010, FA- Slight signal loss in left internal capsule | 09/29/2010, Report uploaded, LONI upload not yet |
| 178439836 | Borderline | 06/02/2010 | 06/18/2010 | 08/16/2010, Bad coverage (intermediate), superior ~3-4 slices cut, very minor cerebellum cut; 2 (4%) directions excluded; 2 directions (#s 15, 36) manually extracted [9/30/10] | 08/16/2010, FA-signal loss in splenium, slight noise in brain stem | 09/30/2010, Report uploaded, LONI upload not yet |
| 146484385 | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 08/16/2010, Bad coverage (minor), minor cerebellulm cut, superior slices cut, 6 directions (#s 12, 24, 26, 29, 33, 34) manually extracted | 09/29/2010, slight noise in middle cerebellar peduncle | 09/29/2010, Report uploaded, LONI upload not yet |
| 142620813 | Borderline, coverage (intermediate) | 06/02/2010 | 06/21/2010 | 08/13/2010, Bad coverage (intermediate), cerebellum minor cut, right inferior temporal lobe cut, superior minor cut; | 08/16/2010, slight signal loss in the splenium and brainstem | 09/30/2010, Report uploaded, LONI upload not yet |
| 127352856 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 08/13/2010, Bad coverage (minor) minor cuts: cerebellum, right tip of temporal lobe, superior | 08/13/2010, Signal loss in left Internal Capsule; FA - signal loss in corpus callosum & left arcuate | 09/30/2010, Report uploaded, LONI upload not yet |
| 116963426 | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 08/13/2010, Bad coverage (intermediate) cerebellum halfway cut and tip of left temporal lobe cut; 10 (15%) directions excluded, 2 directions (#s 35,50) manually excluded | 09/29/2010, possible motion in NRRD files | 09/29/2010, Report uploaded, LONI upload not yet |
| 111611855 | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 08/13/2010, Bad coverage (minor) cerebellum minor cut; 11 (17%) directions excluded | 08/13/2010, Possible motion and 1st axial slice (anterior portion) bright in NRRD files; possible signal loss in left pre-frontal lobe; GM artifact in pre-frontal lobe | 11/19/2010, Report uploaded, LONI upload not yet |
| 058773254 | Borderline, coverage (intermediate); signal loss | 06/02/2010 | 06/21/2010 | 08/13/2010, Bad coverage (intermediate), cerebellum minor cut, inferior temporal lobe cut, 1 superior slice cut | 08/13/2010, Signal loss in left internal capsule; slight noise in brainstem, splenium | 09/30/2010, Report uploaded, LONI upload not yet |
| 057832479 | Borderline, coverage (intermediate) | 06/02/2010 | 06/18/2010 | 08/12/2010, Bad coverage (intermediate) cerebellum halfway cut, inferior temporal lobe cut; 1 direction (# 3) manually extracted | 08/12/2010, Possible motion artifacts in NRRD files, Signal loss in left internal capsule | 09/30/2010, Report uploaded, LONI upload not yet |
| 034032275 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 08/12/2010, Bad coverage (minor) cerebellum minor cut; 1 (3%) direction excluded, some distortion visible across gradients | 08/12/2010, Motion artifacts in NRRD files, slight noise in left inferior longitudinal fasciculus/inferior fronto-occipital fasciculus | 11/19/2010, Report uploaded, LONI upload not yet |
| 898585830 | Borderline, coverage (intermediate) | 06/02/2010 | 06/18/2010 | 08/05/2010, Bad coverage (intermediate), cerebellum minor cut, inferior temporal lobe major cut; 1 (2%) of directions excluded; 9 directions (#s 17,23,25,26,28,29,30,34,45) manually extracted [9/30/10] | 08/06/2010, Anomaly in first slice NRRD files, Slight noise in brainstem and in FA -left internal capsule | 09/30/2010, Report uploaded, LONI upload not yet |
| 842725810 | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 08/05/2010, Bad coverage (minor), cerebellum halfway cut, one slice missing on superior, 5 (8%) directions excluded | 08/05/2010, possible motion artifacts in NRRD files | 09/08/2010, Report uploaded, LONI upload not yet |
| 833038920 | FAIL | 06/02/2010 | 06/18/2010 | 09/08/2010, DTIPrep excluded one gradient, manual recheck, 18 (35%) directions excluded #s: 1,4-7, 9, 13, 14, 18-21, 23, 28-30, 34, 37 | 11/19/2010, Report uploaded, LONI upload not yet | |
| 746350260 | Borderline | 06/02/2010 | 06/18/2010 | 08/04/2010, Bad coverage (intermediate), cerebellum major cut, R inferior temporal lobe cut; 3 (5%) directions excluded | 08/04/2010, possible motion artifacts in NRRD files; slight noise or lesion in R side of thalmus | 09/08/2010, Report uploaded, LONI upload not yet |
| 72624584X | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 08/04/2010, Bad coverage (minor), cerebellum minor cut, 2 (3%) directions excluded; 2 directions (#s 12, 56) manually excluded | 08/04/2010, possible motion artifacts in NRRD files; GM artifacts in pre-frontal lobe | 11/19/2010, Report uploaded, LONI upload not yet |
| 680588411 | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 08/04/2010, Bad coverage (minor), cerebellum minor cut | 08/04/2010, possible motion artifacts in NRRD files; GM artifact in pre-frontal lobe | 09/07/2010, Report uploaded, LONI upload not yet |
| 658092030 | Borderline, coverage (intermediate) | 06/02/2010 | 06/18/2010 | 08/04/2010, Bad coverage (intermediate), cerebellum major cut, inferior temporal lobe minor cut; 2 (3%) directions excluded | 08/04/2010, FA - slight noise in posterior limb of the internal capsule; GM artifact in pre-frontal lobe | 09/07/2010, Report uploaded, LONI upload not yet |
| 644036541 | Pass | 06/03/2010 | 06/21/2010 | 10/28/2010, 21 (31.8%) directions exluded, 5 directions (#s 12, 16, 29, 34, 35) manually extracted [total excluded=39% - 2 scan Philips has 60% threshold] | 10/28/2010, possible motion in NRRD file; GM artifact in pre-frontal lobe | 10/28/2010, Report uploaded, LONI upload not yet |
| 577436951 | Borderline, coverage (minor) | 06/03/2010 | 06/18/2010 | 08/03/2010, Bad coverage (minor), superior minor cut; Wrap-around artifacts in Axial slice 4 baseline; slight "3-stripe blur" visible in coronal/sagittal DWIs | 08/03/2010, slight noise in FA - brainstem and cpt/cst/str | 09/07/2010, Report uploaded, LONI upload not yet |
| 541359481 | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 08/02/2010, Bad coverage (minor), cerebellum minor cut; 5 (8%) directions excluded | 08/03/2010, Possible motion artifacts in NRRD files, GM artifact in pre-frontal lobe | 09/07/2010, Report uploaded, LONI upload not yet |
| 524872211 | FAIL | 06/03/2010 | 06/18/2010 | 08/02/2010, BAD, 18 (55%) of directions excluded | 08/03/2010, Report uploaded, LONI upload not yet | |
| 505852581 | FAIL | 06/02/2010 | 06/18/2010 | 08/02/2010, Bad coverage (minor), superior ~1-2 slices missing, 14 (27%) of directions excluded, 2 directions (#s 31, 36) manually extracted [10/14/10] bringing total exclusions to 16 or 31%, surpassing the threshold | 08/03/2010, Slight noise in FA- left inferior longitudinal fasciculus, brainstem | 10/14/2010, Report uploaded, LONI upload not yet |
| 40259263X | Borderline, coverage (intermediate) | 06/02/2010 | 06/18/2010 | 08/02/2010, Bad coverage (intermediate) Cerebellum major cut and inferior temporal lobe cut; 4 (12%) directions excluded by DTIPrep, 2 directions (#s 6, 10); Second scan rejected = a total of 59% exclusions (under the 60% threshold for 2 scan Philips data) | 08/02/2010, Possible motion artifacts in NRRD files, FA-slight noise in R middle cerebellar peduncle; GM artifact in pre-frontral lobe | 11/22/2010, Report uploaded, LONI upload not yet |
| 289351801 | FAIL | 06/02/2010 | 06/18/2010 | 08/02/2010, BAD 26 (78%) of directions excluded | 08/03/2010, Report uploaded, LONI upload not yet | |
| 152270051 | Borderline, coverage (intermediate) | 06/02/2010 | 06/18/2010 | 07/30/2010, Bad coverage (intermediate), cerebellum major cut, 4 (6%) directions excluded | 08/02/2010, Difficulty tracking - Coronal CC, wrapping in genu & splenium, missing anterior part of arcuate, superior elements of Internal Capsule missing, some issues in Cingulum; possible motion artifacts in NRRD files; GM artifact in pre-frontal lobe | 11/22/2010, Report uploaded, LONI upload not yet |
| 113434720 | Borderline, coverage (minor) | 06/02/2010 | 06/18/2010 | 07/30/2010, Bad coverage (minor), cerebellum minor cut, 4 (6%) directions excluded | 08/02/2010, Possible motion artifacts in NRRD files; GM artifact in pre-frontal lobe | 11/04/2010, Report uploaded, LONI upload not yet |
| 111303380 | Borderline, coverage (minor) | 06/02/2010 | 11/15/2010 | 02/24/2011, Bad coverage, minor cerebellum cut and 1 superior slice cut; 5 (7%) directions excluded, 3 directions (#s 6,30,50) manually extracted; lateral distortions @ axs 12-14, bar artifacts @ axs 25-28, 32-35, "Z-stripe" @ axs 21-25 | 02/24/2011, NRRD files - wrapping artifacts, slight anterior pre-frontal artifacts/posterior occipital artifacts; "Z-stripe" @ ax 22 | 02/24/2011, report uploaded, LONI upload not yet |
| 056927020 | Borderline, coverage (minor) | 06/02/2010 | 06/21/2010 | 07/30/2010, Bad coverage (minor) superior minor cut, 1 direction (28) manually extracted [10/14/10] | 07/30/2010, FA, Slight noise in internal capsule and brain stem | 10/14/2010, Report uploaded, LONI upload not yet |
| 029806281 | Borderline, (minor) | 06/03/2010 | 06/18/2010 | 07/30/2010, Bad coverage (minor), cerebellum minor cut, 1 (2%) direction excluded | 07/30/2010, possible motion artifacts in NRRD files, corner darker in Axial 1; GM artifacts in pre-frontal lobe | 11/22/2010, Report uploaded, LONI upload not yet |
| 753361684 | Borderline, coverage (minor) | 06/01/2010 | 07/07/2010, first "zoltan" case fully processed | 07/07/2010, coverage in cerebellum (minor), 12 (16%) directions excluded, 1 manual exclusion (#1) "Z stripe" visible in axs 25,26 | 11/15/2010, NRRD files - "Z stripe" in ax 26, anterior pre-frontal sig loss/ posterior occipital sig loss, wrapping artifacts | 02/11/2010, report uploaded LONI upload not yet |
| 022622624 | Borderline, coverage (minor) | 06/01/2010 | 06/21/2010, 2 datasets, combined into a single dataset manually | 08/06/2010, Bad coverage, cerebellum minor cut, 6 (9%) directions excluded, 2 directions (#s 5, 33) manually extracted | 08/09/2010, Difficulty tracking all of cingulum and internal capsule, possible motion in NRRD files, noise artifact on outer edge of left internal capsule | 02/03/2011, Report uploaded, LONI upload not yet |
| 631878895 | Borderline, coverage (minor) | 06/01/2010, downloaded as batch | 06/02/2010, | 06/02/2010, 2 directions excluded, 3 directions (#s 1, 10, 19) manually extracted = total exclusions 15%; Distribution of directions are quite non-uniform | 06/02/2010, coverage in cerebellum inadequate, first slice is bad (removed), possible motion in NRRD files; GM artifact in pre-frontal lobe | 11/22/2010, Report uploaded, LONI upload not yet |
in first column, use color #ff0000 (red) for failing datasets, color #44ff00 (green) for successful datasets and yellow (#ffff00) for borderline datasets.
